Author

Ben Stocks

University of CopenhagenORCID 0000-0002-9281-0793Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1

Frequent Co-Authors

Atul S. DeshmukhiD· 3 shared Roger Moreno‐JusticiaiD· 3 shared Jonas T. TreebakiD· 2 shared Morten HostrupiD· 2 shared Alba González-FranquesaiD· 1 shared Alexia Van de LoockiD· 1 shared An StaesiD· 1 shared Caio Yogi YonamineiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersPhysiology

Atul S. DeshmukhORCID

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3 papers

Recent·Most cited

Muscle fiber proteomics reveals sex- and fiber type-specific adaptations to resistance training

Lukas Moesgaard, Roger Moreno‐Justicia, Johann H. Schmalbruch, Søren Jessen, Ben Stocks, Nicoline R. Andersen, Jens J. Nielsen, Caio Yogi Yonamine, Jonas T. Treebak, Jens Bangsbo, Clara Prats, Lykke Sylow, Atul S. Deshmukh, Morten Hostrup

The paper examines sex- and fiber type-specific proteome changes in human skeletal muscle after resistance training, finding greater adaptations in type II fibers and sex differences in intermediate filament remodeling.

Nature Communications · Sep 2, 2026Peer-reviewedPhysiology

Deconvoluting fiber type proportions from human skeletal muscle transcriptomics and proteomics data using FibeRtypeR

Thibaux Van der Stede, Roger Moreno‐Justicia, Freek Van de Casteele, Eline Lievens, Alexia Van de Loock, Jonas Vandecauter, Peter Merseburger, Jimmy Van den Eynden, Delphi Van Haver, An Staes, Simon Devos, Morten Hostrup, Pieter Mestdagh, Jo Vandesompele, Ben Stocks, , Wim Derave

This paper introduces FibeRtypeR, a tool to estimate muscle fiber type proportions from bulk transcriptomics and proteomics data using single-fiber reference profiles.

bioRxiv · Sep 17, 2025 · PreprintPhysiology

Mass-spectrometry based proteomics reveals mitochondrial supercomplexome plasticity

Alba González-Franquesa, Ben Stocks, Sabina Chubanava, Helle B. Hattel, Roger Moreno‐Justicia, Lone Peijs, Jonas T. Treebak, Juleen Rae Zierath, Atul S. Deshmukh

The paper uses mass spectrometry to analyze mitochondrial supercomplexes in mice, revealing dynamic changes in subunit composition and new protein associations during exercise training.

Cell Reports · May 1, 2021Peer-reviewedMolecular Biology