Author

Gyeong Dae Kim

Harvard UniversityORCID 0000-0002-9288-6341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:cell type annotation· 4 Approach:statistical model· 4 Research Focus:cell-cell communication· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Allegra A. PettiiD· 4 shared Anthony Z. WangiD· 2 shared Clara Alves-PereiraiD· 2 shared Gavin P. DunniD· 2 shared Ngima D. SherpaiD· 2 shared Rupen R. DesaiiD· 2 shared Saad M. KhaniD· 2 shared Alain CharestiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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4 shared papersCancer Biology

Allegra A. PettiORCID

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Author profile →

4 papers

Recent·Most cited

Single-Cell Atlas of Non-Functioning Gonadotroph Tumors and Anterior Pituitary Reveals Lineage Infidelity and Clinically Associated Transcriptional Programs

Evan Dennis, Gyeong Dae Kim, Yunli Zhou, Clara Alves Pereira, Qilin Zhang, Gabrielle van der Zee, Alla Tsytsykova, Elizabeth Conner, Ethan Tieu, Roy Soberman, Karen Klahr Miller, Pamela S. Jones, Allegra A. Petti

This study compares single-cell transcriptomes of non-functioning gonadotroph tumors and normal anterior pituitary to identify lineage infidelity and growth-associated programs.

bioRxiv · Oct 27, 2026 · PreprintCancer Biology

Integrated spatial and single-cell transcriptomic analysis of aggressive glioblastoma growth dynamics.

Clara Alves-Pereira, Gyeong Dae Kim, Ngima D. Sherpa, Kayla Colvin, Saad M. Khan, Khanh P. Phan, Anthony Z. Wang, Ian F. Dunn, Tanner Michael Johanns, Erdyni Tsitsykov, Rupen Desai, Gavin P. Dunn, Allegra A. Petti

This study compares two murine glioblastoma models using single-cell and spatial transcriptomics to reveal distinct tumor-immune dynamics and their correlation with human GBM survival.

bioRxiv · May 14, 2026 · PreprintCancer Biology

LLM-Assisted Functional Gene Annotation

Calvin Boyce, Clara Pereira, Gyeong Dae Kim, Allegra A. Petti

This paper introduces AIGE, an AI tool that automates functional gene annotation with high accuracy and self-assessment capabilities.

bioRxiv · Aug 6, 2025 · PreprintBioinformatics

Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions

Saad M. Khan, Anthony Z. Wang, Rupen R. Desai, Gyeong Dae Kim, Colin R. McCornack, Rui Sun, Sonika M Dahiya, Jennifer Ann Foltz, Ngima D. Sherpa, Katherine Xu, Harrison Olszewski, Markus Anzaldua-Campos, Yuhui Song, Elizabeth Seider, Natan Pirete Gadens, , Allegra A. Petti

This study uses spatial transcriptomics to map glioblastoma's spatial architecture, identifying tumor cell states and intercellular interactions along the core-edge axis.

bioRxiv · Apr 4, 2025 · PreprintCancer Biology