Author

Michael Lukowski

University of ChicagoORCID 0000-0002-9321-1338Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Approach:large language model· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Robert L. GrossmaniD· 2 shared Aarti VenkatiD· 1 shared Alexander KanitziD· 1 shared Andrew Prokhorenkov· 1 shared Angel PizarroiD· 1 shared Anirudh SubramanyamiD· 1 shared Brian D. O’ConnoriD· 1 shared Denis YueniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Robert L. GrossmanORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 24, 2026

The GA4GH Workflow Execution Service: A Standard API for Workflow Execution and Management in Genomics

Valentin Schneider-Lunitz, Landfried Kraatz, Patrick Magee…·Sven Olaf Twardziok

The paper introduces the GA4GH Workflow Execution Service API, which standardizes workflow execution across different compute environments and demonstrates its cross-site functionality.

DOI 10.64898/2026.10.20.760340

experimental assaysoftware / tool

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BioinformaticsbioRxivPreprintSep 2, 2025

Query Augmented Generation (QAG) from the Genomic DataCommons for Accurate Variant Statistics

Aarti Venkat, William P. Wysocki, Michael Lukowski…·Robert L. Grossman

The paper introduces QAG, a method to improve LLM accuracy for somatic variant frequencies by integrating with the Genomic Data Commons.

DOI 10.1101/2025.09.02.673797

whole-exome sequencinglarge language model

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BioinformaticsPLoS Computational BiologyPeer-reviewedMar 13, 2023

Towards Self-Describing and FAIR Bulk Formats for Biomedical Data

Michael Lukowski, Andrew Prokhorenkov, Robert L. Grossman

The paper introduces a self-describing format for bulk biomedical data called PFB, showing performance improvements over JSON and SQL for data import/export.

DOI 10.1371/journal.pcbi.1010944

bulk RNA-seqstatistical model

𝕏 PostBluesky