Author

Lingpeng Kong

University of Hong KongORCID 0000-0002-9407-7193Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:DNA methylation· 2 Research Focus:benchmarking· 1 Approach:diffusion model· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Chang MaiD· 1 shared Cong PianiD· 1 shared Haiteng Zhao· 1 shared Hangjin JiangiD· 1 shared Jiayi Xin· 1 shared Kun LangiD· 1 shared Liangyun ZhangiD· 1 shared Lijun WuiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Chang MaORCID

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3 papers

Recent·Most cited

DAPE-PD: Diffusion adaptation of genomic foundation model enables tailored-generation of cis-regulatory DNA

Martín Echavarría Galindo, Shansan Gong, Yuewei Zhan, Shuchen Wang, Lingpeng Kong, Yong Lai

DAPE-PD adapts a genomic foundation model into a diffusion model to generate functional cis-regulatory DNA sequences across three non-model gut commensals.

bioRxiv · Oct 27, 2026 · PreprintSynthetic Biology

Retrieved Sequence Augmentation for Protein Representation Learning

Chang Ma, Haiteng Zhao, Linjin Zheng, Jiayi Xin, Qintong Li, Lijun Wu, Zhihong Deng, Lu Yang, Qi Liu, Lingpeng Kong

This paper introduces a method to improve protein representation learning by retrieving and integrating similar sequences without alignment, achieving faster and more accurate predictions than traditional methods.

bioRxiv · Feb 22, 2023 · PreprintBioinformatics

Deep6mA: a deep learning framework for exploring similar patterns in DNA N6-methyladenine sites across different species

Zutan Li, Hangjin Jiang, Lingpeng Kong, Yuanyuan Chen, Kun Lang, Xiaodan Fan, Liangyun Zhang, Cong Pian

Deep6mA is a deep learning framework for identifying DNA 6mA sites, achieving high accuracy across species and revealing conserved sequence patterns and regulatory roles of 6mA.

PLoS Computational Biology · Feb 18, 2021Peer-reviewedBioinformatics