Author
Mark D. Yandell
University of UtahORCID 0000-0002-9497-4505Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2018-2026 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 21 mutual co-author linksMutual co-authors in cluster
13 papers
Recent·Most cited
- Genetic & Genomic MedicineNature CommunicationsPeer-reviewed
Genome Sequencing is Critical for Forecasting Outcomes Following Congenital Cardiac Surgery
W. Scott Watkins, Edgar Javier Hernandez, Thomas A. Miller…·Martin Tristani‐Firouzi
This study uses AI to show that genome sequencing can predict adverse outcomes after congenital heart defect surgery by identifying damaging genotypes in specific genes.
7 citationstop 4% - Genetic & Genomic MedicinemedRxivPreprint
MPSE provides fast, flexible, and efficient means to identify newborns who will benefit from whole genome sequencing within the first 48 hours of NICU admission
Bennet D. Peterson, Edwin F. Juarez, Barry Moore…·Mark D. Yandell
The paper evaluates MPSE's performance in prioritizing NICU newborns for WGS within 48 hours using various ML classifiers, CNLP tools, and data types, finding high accuracy and flexibility.
DOI 10.1101/2024.11.05.24316150 - Genetic & Genomic MedicineGenome MedicinePeer-reviewed
The impact of damaging epilepsy and cardiac genetic variant burden in sudden death in the young
Megan J. Puckelwartz, Lorenzo L. Pesce, Edgar Javier Hernandez…·Elizabeth M. McNally
This study identifies genetic variants in epilepsy, cardiomyopathy, and arrhythmia genes in a sudden death in the young cohort, finding enrichment of damaging variants and a correlation with younger age at death.
16 citationstop 4% - GenomicsbioRxivPreprint
Assembly and annotation of two high-quality columbid reference genomes from sequencing of a Columba livia x Columba guinea F1 hybrid
Emily T. Maclary, Carson Holt, Gregory T. Concepcion…·Michael D. Shapiro
The paper presents high-quality genome assemblies and annotations for two pigeon species using long-read sequencing of an F1 hybrid, improving genomic resources for comparative genomics and functional studies.
DOI 10.1101/2023.10.11.561892 - Genetic & Genomic MedicineCommunications MedicinePeer-reviewed
Genetic, demographic and clinical variables act synergistically to impact neurodevelopmental outcomes in children with single ventricle heart disease
Thomas A. Miller, Edgar Javier Hernandez, James William Gaynor…·Martin Tristani‐Firouzi
The paper examines how genetic, demographic, and clinical factors interact to influence neurodevelopmental outcomes in children with single ventricle heart disease.
9 citations - Genetic & Genomic MedicinemedRxivPreprint
Estimation of offspring genetic risk scores using parental genotypes.
Adebayo A. Adesomo, Tsegaselassie Workalemahu, Matthew B. Givens…·Nathan R. Blue
This paper estimates offspring genetic risk scores from parental DNA and finds that they can be accurately estimated with percent errors below 10% for most traits.
DOI 10.1101/2022.06.09.22276224 - Genetic & Genomic MedicineGenome MedicinePeer-reviewed
Artificial intelligence enables comprehensive genome interpretation and nomination of candidate diagnoses for rare genetic diseases
Francisco M. De La Vega, Shimul Chowdhury, Barry Moore…·Stephen Francis Kingsmore
GEM, an AI-based tool, ranks causal genes highly for rare genetic diseases, improving diagnostic efficiency and reducing manual effort.
173 citationstop 1% - GeneticsCurrent BiologyPeer-reviewed
A ROR2 coding variant is associated with craniofacial variation in domestic pigeons
Elena F. Boer, Hannah F. Van Hollebeke, Emily T. Maclary…·Michael D. Shapiro
The paper identifies a ROR2 coding variant associated with short beak morphology in domestic pigeons, linking it to craniofacial variation through QTL mapping and genomic analysis.
18 citationstop 3% - GeneticsMolecular Biology and EvolutionPeer-reviewed
Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon (Columba livia)
Emily T. Maclary, Bridget Phillips, Ryan Wauer…·Michael D. Shapiro
This study identifies two genomic loci associated with iris color variation in domestic pigeons, linking iris and plumage color traits and highlighting the role of gene duplicates in color evolution.
19 citations - GeneticsHuman Genetics and Genomics AdvancesPeer-reviewed
Deep whole genome sequencing of multiple proband tissues and parental blood reveals the complex genetic etiology of congenital diaphragmatic hernias
Eric L. Bogenschutz, Zac D Fox, Andrew Farrell…·Gabrielle Kardon
The paper uses deep whole genome sequencing to analyze genetic variants in CDH patients and their families, revealing heterogeneous and multifactorial genetic etiology.
13 citations - GeneticsPLoS GeneticsPeer-reviewed
A copy number variant is associated with a spectrum of pigmentation patterns in the rock pigeon (Columba livia)
Rebecca Bruders, Hannah F. Van Hollebeke, Edward J. Osborne…·Michael D. Shapiro
The paper identifies a copy number variant at the St locus associated with pigmentation patterns in rock pigeons, linking structural variation to gene expression and phenotypic diversity.
49 citationstop 3% - GenomicsG3 Genes Genomes GeneticsPeer-reviewed
Improved genome assembly and annotation for the rock pigeon (Columba livia)
Carson Holt, Michael S. Campbell, David A. Keays…·Michael D. Shapiro
The paper updates the rock pigeon genome assembly and annotation, improving tools for evolutionary and functional genetic studies.
58 citations