Author

Hossein Farahani

University of British ColumbiaORCID 0000-0002-9503-1875Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Adi SteifiD· 1 shared Adrian LevineiD· 1 shared Alexandre Bouchard‐CôtéiD· 1 shared Ali BashashatiiD· 1 shared Aline TalhoukiD· 1 shared Andrew McPhersoniD· 1 shared Anne M. MillsiD· 1 shared Basile Tessier‐CloutieriD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adi SteifORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Synthesis of diagnostic quality cancer pathology images

Adrian Levine, Jason Peng, David Farnell, Mitchell Nursey, Yiping Wang, Julia R. Naso, Hezhen Ren, Hossein Farahani, Colin Chen, Derek S. Chiu, Aline Talhouk, Brandon S. Sheffield, Maziar Riazy, Philip P.C. Ip, Carlos Parra‐Herran, , Ali Bashashati

This study uses GANs to synthesize high-resolution cancer pathology images, showing they are visually indistinguishable from real images and perform as well as real images in diagnostic tasks.

bioRxiv · Feb 24, 2020 · PreprintBioinformatics

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Kieran R. Campbell, Adi Steif, Emma Laks, Hans Zahn, Daniel Lai, Andrew McPherson, Hossein Farahani, Farhia Kabeer, Ciara H. O’Flanagan, Justina Biele, Jazmine Brimhall, Beixi Wang, Pascale Walters, Alexandre Bouchard‐Côté, Samuel A. J. R. Aparicio, Sohrab P. Shah

clonealign integrates single-cell RNA and DNA sequencing data from cancer samples to identify clone-specific gene expression patterns and dysregulated pathways.

Genome biology · Mar 12, 2019Peer-reviewedBioinformatics