Author

Annegret Kohler

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0002-9575-9567Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Plant Biology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 6 Organism:plant (other)· 3 Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Francis M MartiniD· 5 shared Igor V. GrigorieviD· 4 shared Kerrie BarryiD· 3 shared Martina PeteriD· 3 shared Anna LipzeniD· 2 shared Benjamin DauphiniD· 2 shared Claire Veneault‐FourreyiD· 2 shared Emmanuelle MoriniD· 2 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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5 shared papersGenomics

Francis M MartinORCID

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Poplar CLE peptides stimulating ectomycorrhizal symbiosis uncovered by genome-wide identification of ectomycorrhizal-responsive small secreted peptides

Clémence Bonnot, Emmanuelle Morin, Alexandra Hénocq, Alexis Chartoire, Emilie Da Silva Machado, Claire Veneault‐Fourrey, Annegret Kohler, Francis M Martin

The paper identifies Poplar CLE peptides that promote ectomycorrhizal symbiosis, showing functional divergence from their roles in repressing other symbioses.

PLANT PHYSIOLOGY · Feb 20, 2026Peer-reviewedPlant Biology

Prevalence of water and nutrient availability in structuring fungal communities of healthy and decaying beech trees in forests

F. Fracchia, Benjamin Dauphin, Lorenz Walthert, René Graf, Roger Köchli, S. Pfister, Andri Baltensweiler, Annegret Kohler, Martina Peter

The paper examines how water and nutrient availability shape fungal communities in beech trees, finding that water shortage has a greater impact than tree vitality on fungal community structure.

Plant and Soil · Oct 8, 2025Peer-reviewedEcology

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

José Eduardo Marqués‐Gálvez, Maíra de Freitas Pereira, Uwe Nehls, Joske Ruytinx, Kerrie Barry, Martina Peter, Francis M Martin, Igor V. Grigoriev, Claire Veneault‐Fourrey, Annegret Kohler

This study identifies plant and fungal genetic factors governing ectomycorrhizal compatibility through comparative transcriptomics in poplar and its fungal partners.

bioRxiv · Apr 11, 2025 · PreprintPlant Biology

A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages

Uri Neri, Yuri I. Wolf, Simon Roux, Antônio Pedro Camargo, Benjamin Lee, Darius Kazlauskas, I. Min Chen, Natalia Ivanova, Lisa Zeigler Allen, David Páez-Espino, Donald A. Bryant, Devaki Bhaya, Adrienne B. Narrowe, Alexander J. Probst, Alexander Sczyrba, , Vincent J. Denef

The paper expands the global RNA virome by five-fold, identifying new clades of RNA bacteriophages and revealing novel virus-host interactions.

Cell · Sep 28, 2022Peer-reviewedGenomics

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Élodie Drula, Torda Varga, Annegret Kohler, Bang Feng, Yang Cao, Anna Lipzen, Chris G. Daum, Hope N. Hundley, Jasmyn L. Pangilinan, Jenifer Johnson, Kerrie Barry, , Francis M Martin

This study identifies genomic traits of ectomycorrhizal transitions in Boletales by comparing gene repertoires and reconstructing gene duplication/loss histories.

New Phytologist · Nov 12, 2021Peer-reviewedGenomics

Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum

Benjamin Dauphin, Maíra de Freitas Pereira, Annegret Kohler, Igor V. Grigoriev, Kerrie Barry, Hyunsoo Na, Mojgan Amirebrahimi, Anna Lipzen, Francis M Martin, Martina Peter, Daniel Croll

This study analyzes genome-wide structural variation and recombination in Cenococcum geophilum using whole-genome sequencing, revealing lineage-specific copy-number variation and heterothallism.

Environmental Microbiology · Sep 2, 2021Peer-reviewedGenomics