Author

Hope N. Hundley

Lawrence Berkeley National LaboratoryORCID 0000-0001-5071-4587Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioengineering· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Anna LipzeniD· 3 shared Kerrie BarryiD· 3 shared Chris G. DaumiD· 2 shared Jasmyn L. PangilinaniD· 2 shared Alan KuoiD· 1 shared Annegret KohleriD· 1 shared Bang FengiD· 1 shared Bernard HenrissatiD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersBioengineering

Anna LipzenORCID

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4 papers

Recent·Most cited

BioengineeringTrends in biotechnologyPeer-reviewedOct 1, 2026

Engineering anaerobic fungal-bacterial consortia for direct conversion of lignocellulosic biomass into medium-chain fatty acids

Byung-Chul Kim, Elaina M. Blair, Joel P. Howard…·Christopher E. Lawson

This study engineers an anaerobic fungal-bacterial consortium to convert lignocellulosic biomass into medium-chain fatty acids without pretreatment, achieving a 21.0% conversion yield.

1 citation

experimental assayecology & biodiversity

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Evolutionary BiologyJournal of Experimental BotanyPeer-reviewedMay 20, 2026

Integrative analysis of CAM photosynthesis reveals its impact on primary metabolism in Yucca

David Wickell, Richard Field, Karl Weitz…·Karolina Heyduk

This study integrates transcriptomic, proteomic, and metabolomic data to analyze the impact of CAM photosynthesis on primary metabolism in Yucca species.

1 citation

plant (other)proteomics

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GenomicsbioRxivPreprintJan 31, 2022

Genetic mapping of flowering time and plant height in a maize Stiff Stalk MAGIC population

Kathryn J. Michel, Dayane Cristina Lima, Hope N. Hundley…·Shawn M. Kaeppler

The paper develops a MAGIC population in maize to map flowering time and plant height, finding that predictive models perform better when trained on direct data rather than indirect data from hybrids.

DOI 10.1101/2022.01.31.478539

zebrafishwhole-genome sequencing

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GenomicsNew PhytologistPeer-reviewedNov 12, 2021

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu, Shingo Miyauchi, Emmanuelle Morin…·Francis M Martin

This study identifies genomic traits of ectomycorrhizal transitions in Boletales by comparing gene repertoires and reconstructing gene duplication/loss histories.

55 citations

whole-genome sequencingstatistical model

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