Jiye Shi

Ab-Ligity: Identifying sequence-dissimilar antibodies that bind to the same epitope

Ab-Ligity identifies sequence-dissimilar antibodies that bind to the same epitope by analyzing antibody-antigen interfaces, outperforming existing tools in precision and speed.

Co-evolutionary Distance Prediction for Flexibility Prediction

This paper uses residue-residue distance predictions to assess protein flexibility, finding that flexible residue pairs have more local maxima in their predicted distance distributions.

A Multi-Crystal Method for Extracting Obscured Signal from Crystallographic Electron Density

The paper introduces a method to extract obscured signals from crystallographic electron density by deconvoluting superposed crystal states, even with poor starting models.