Author

Yiran Shan

Tsinghua UniversityORCID 0000-0002-9663-3499Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Jin GuiD· 3 shared Wenbo GuoiD· 3 shared Changyi LiuiD· 1 shared Dongfang WangiD· 1 shared Guiying WuiD· 1 shared Hongyi XiniD· 1 shared Qian ZhangiD· 1 shared Qiuyu LianiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Jin GuORCID

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3 papers

Recent·Most cited

TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics

Yiran Shan, Qian Zhang, Wenbo Guo, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu

TIST integrates spatial transcriptomics data with histopathological images to improve spatial cluster identification and gene expression analysis.

Genomics Proteomics & Bioinformatics · Oct 1, 2022Peer-reviewedBioinformatics

New gene association measures by joint network embedding of multiple gene expression datasets

Guiying Wu, Xiangyu Li, Wenbo Guo, Wei Zheng, Tao Hu, Yiran Shan, Jin Gu

The paper introduces JEBIN, a method to integrate multiple gene expression datasets into a low-dimensional gene representation, showing improved performance in co-expression network analysis and differential co-expression studies.

Briefings in Bioinformatics · Dec 28, 2021Peer-reviewedBioinformatics

scCancer: a package for automated processing of single cell RNA-seq data in cancer

Wenbo Guo, Dongfang Wang, Shicheng Wang, Yiran Shan, Changyi Liu, Jin Gu

scCancer processes and analyzes scRNA-seq data for cancer research, identifying cell populations, estimating malignancy scores, and analyzing intra-tumor heterogeneity.

Briefings in Bioinformatics · May 25, 2020Peer-reviewedBioinformatics