Author

Qian Zhang

Beijing National Research Center for Information Science and TechnologyORCID 0000-0002-2153-842XUnclaimed ORCID profile · follow to get notified of new preprints

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Qian Zhang21 papers · Virginia Tech

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1 Organism:mouse· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Florian MuelleriD· 1 shared Gang CaoiD· 1 shared Hongyi XiniD· 1 shared Huaiyuan CaiiD· 1 shared Jin GuiD· 1 shared Kun SongiD· 1 shared Ni HongiD· 1 shared Qiuyu LianiD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Florian MuellerORCID

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3 papers

Recent·Most cited

U-FISH: a universal deep learning approach for accurate FISH spot detection across diverse datasets

Weize Xu, Huaiyuan Cai, Qian Zhang, Florian Mueller, Wei Ouyang, Gang Cao

U-FISH improves FISH spot detection accuracy and generalization using a deep learning approach with a U-Net model and a large annotated dataset.

bioRxiv · Mar 6, 2024 · PreprintBioinformatics

TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics

Yiran Shan, Qian Zhang, Wenbo Guo, Yanhong Wu, Yuxin Miao, Hongyi Xin, Qiuyu Lian, Jin Gu

TIST integrates spatial transcriptomics data with histopathological images to improve spatial cluster identification and gene expression analysis.

Genomics Proteomics & Bioinformatics · Oct 1, 2022Peer-reviewedBioinformatics

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

Wei Qing Xu, Weilong Yang, Yunlong Zhang, Ya‐Wen Chen, Ni Hong, Qian Zhang, Xuefei Julie Wang, Yukun Hu, Kun Song, Wenfei Jin, Xi Xian Chen

ISSAAC-seq jointly profiles chromatin accessibility and gene expression in single nuclei, revealing cell types, regulatory elements, and chromatin dynamics in mouse cerebral cortex.

Nature Methods · Sep 15, 2022Peer-reviewedGenomics