Wei Zheng

The paper constructs a generic chromatin accessibility reference (cPeaks) from bulk ATAC-seq data to improve scATAC-seq analysis and cell type identification.

The paper introduces JEBIN, a method to integrate multiple gene expression datasets into a low-dimensional gene representation, showing improved performance in co-expression network analysis and differential co-expression studies.

NeuronMotif decodes cis-regulatory motifs from DCNNs by analyzing neuron activations, revealing motif combinations and improving model performance.

SIP provides an interchangeable pipeline for scRNA-seq data processing, enabling easy integration and customization of analysis steps.