Author

Erik J. Bergstrom

University of WashingtonORCID 0000-0002-9939-7831Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Organism:plant (other)· 1 Assay:proteomics· 1

Frequent Co-Authors

Andrew B. StergachisiD· 1 shared Bryan Ramirez-CoronaiD· 1 shared Christine QueitschiD· 1 shared Christopher D. McGanniD· 1 shared Cole TrapnelliD· 1 shared Devin K. SchweppeiD· 1 shared Jane E. RanchalisiD· 1 shared Jimmy K. EngiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Andrew B. StergachisORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsJournal of Proteome ResearchPeer-reviewedJun 17, 2025

Comet fragment-ion indexing for enhanced peptide sequencing

Christopher D. McGann, Erik J. Bergstrom, Vagisha Sharma…·Devin K. Schweppe

This paper enhances the Comet search engine with fragment-ion indexing, improving peptide spectral matching speeds by up to 94% while maintaining accuracy in proteomics applications.

9 citations

proteomicsexperimental assay

𝕏 PostBluesky

GenomicsNature PlantsPeer-reviewedMay 13, 2025

The regulatory potential of transposable elements in maize

Kerry L. Bubb, Morgan O. Hamm, Thomas W. Tullius…·Christine Queitsch

This study uses Fiber-seq to analyze TE regulatory potential in maize, revealing epigenetic patterns and gene interaction mechanisms.

32 citationstop 1%

plant (other)long-read sequencing

𝕏 PostBluesky