Author

Yuya Tokuta

Kyoto UniversityORCID 0000-0002-9999-1064Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Organism:mouse· 2 Organism:non-human primate· 2 Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Masahiro NaganoiD· 2 shared Mitinori SaitouiD· 2 shared Yasuaki HiraokaiD· 2 shared Yusuke ImotoiD· 2 shared Kohei Fujiwara· 1 shared Masanori Imamura· 1 shared Olympio Hacquard· 1 shared Shuto DeguchiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Masahiro NaganoORCID

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2 papers

Recent·Most cited

BioinformaticsCell Reports MethodsPeer-reviewedOct 1, 2026

Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport

Yuya Tokuta, Tomonori Nakamura, Kohei Fujiwara…·Yasuaki Hiraoka

Species-OT uses Gromov-Wasserstein optimal transport to compare transcriptome geometries across species, identifying gene correspondences and transcriptomic discrepancies.

2 citations

mousehuman

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 30, 2026

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CycloCross: Adversarial single-cell RNA-seq data translation across species

Olympio Hacquard, Yuya Tokuta, Yusuke Imoto…·Yasuaki Hiraoka

Translating cells between mouse, macaque and human scRNA-seq with a CycleGAN, without ortholog mapping, preserved developmental time structure, imputed missing states and produced more realistic synthetic cells than scGAN.

1 citation

humanmouse

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