Author

Tomonori Nakamura

Kyoto UniversityORCID 0000-0002-0173-0780Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Tomonori Nakamura2 papers · Kyoto University

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Mitinori SaitouiD· 3 shared Takuya YamamotoiD· 2 shared Yasuaki HiraokaiD· 2 shared Yoji KojimaiD· 2 shared Yusuke ImotoiD· 2 shared Atsutaka Minagawa· 1 shared Belinda Kaswandy· 1 shared Bo WangiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioinformatics

Mitinori SaitouORCID

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3 papers

Recent·Most cited

BioinformaticsCell Reports MethodsPeer-reviewedOct 1, 2026

Geometric inference of cross-species transcriptome correspondence using Gromov-Wasserstein optimal transport

Yuya Tokuta, Tomonori Nakamura, Kohei Fujiwara…·Yasuaki Hiraoka

Species-OT uses Gromov-Wasserstein optimal transport to compare transcriptome geometries across species, identifying gene correspondences and transcriptomic discrepancies.

2 citations

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BioinformaticsLife Science AlliancePeer-reviewedAug 9, 2022

Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis

Yusuke Imoto, Tomonori Nakamura, Emerson G. Escolar…·Mitinori Saitou

This paper introduces RECODE, a noise reduction method for scRNA-seq data that eliminates the curse of dimensionality, improves cell clustering, and recovers gene expression for all genes.

38 citations

scRNA-seqstatistical model

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Developmental BiologyCell stem cellPeer-reviewedApr 7, 2021

Capturing Human Trophoblast Development with Naive Pluripotent Stem Cells In Vitro

Shingo Io, Mio Kabata, Yoshiki Iemura…·Yasuhiro Takashima

This study shows that naive human pluripotent stem cells can recapitulate trophoblast development in vitro, producing cells that resemble human placental trophoblasts.

281 citationstop 1%

humanexperimental assay

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