Author

David Pattinson

University of Wisconsin–MadisonORCID 0000-0003-0001-8203Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:proteomics· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Hannah V. MeyeriD· 2 shared Sarah R. ChapiniD· 2 shared Amitava BanerjeeiD· 1 shared Anastasia A. MinervinaiD· 1 shared Armend A. AxhemiiD· 1 shared Carl BartoniD· 1 shared Cornelia L. WincekiD· 1 shared Guanchen HeiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersImmunology

Hannah V. MeyerORCID

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2 papers

Recent·Most cited

ImmunologyCell SystemsPeer-reviewedJan 25, 2024

Comprehensive epitope mutational scan database enables accurate T cell receptor cross-reactivity prediction

Amitava Banerjee, David Pattinson, Cornelia L. Wincek…·Hannah V. Meyer

The paper introduces a database of TCR-peptide mutational assays and a Bayesian model to predict TCR cross-reactivity, showing improved performance over existing methods.

14 citations

humanmouse

𝕏 PostBluesky

ImmunologybioRxivPreprintNov 28, 2023

Identification of Antigen-Specific T Cell Receptors with combinatorial peptide pooling

Vasilisa A. Kovaleva, David Pattinson, Guanchen He…·Hannah V. Meyer

This paper introduces copepodTCR, a tool for designing and interpreting TCR specificity assays, which efficiently identifies antigen-specific TCRs using combinatorial peptide pooling and Bayesian modeling.

4 citations

humanproteomics

𝕏 PostBluesky