Aritra Mahapatra

This study shows that different colorectal cancer genotypes create distinct microbial ecosystems and that microbiota dependence decreases as tumors progress.

DeePhy is a deep learning model that reconstructs phylogenetic trees from unaligned nucleotide sequences, outperforming existing methods in triplet tree topology inference.

This paper introduces the Deformity Index, a new metric for evaluating phylogenetic tree correctness without requiring a reference tree, and demonstrates its robustness and scalability.

GRAFree reconstructs phylogenetic trees from mitochondrial genomic sequences using a novel distance measure and consensus merging algorithm, showing high bootstrap support for evolutionary relationships.