Author

Kenji Miyamoto

Keio UniversityORCID 0000-0003-0080-4693Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein design· 1 Research Focus:protein folding & dynamics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Dominik GrossiD· 1 shared Elske van der PoliD· 1 shared J. EderiD· 1 shared Lisa-Marie KrammeriD· 1 shared Manato AkiyamaiD· 1 shared Masakazu KataokaiD· 1 shared Mika UeharaiD· 1 shared Mitsuhiro ItayaiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBiochemistry

Dominik GrossORCID

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2 papers

Recent·Most cited

BiochemistryChemical CommunicationsPeer-reviewedJan 1, 2026

Hydrophobic pocket engineering of arylmalonate decarboxylase expands its substrate scope towards the synthesis of the (R)-enantiomers of sterically hindered carboxylic acids

Elske van der Pol, Lisa-Marie Krammer, J. Eder…·Robert Kourist

This study modifies arylmalonate decarboxylase to expand its substrate scope for synthesizing (R)-enantiomers of sterically hindered carboxylic acids with high enantiopurity.

DOI 10.1039/d6cc02837c

experimental assayprotein folding & dynamics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 8, 2025

Generative AI-driven artificial DNA design for enhancing inter-species gene activation and enzymatic degradation of PET

Manato Akiyama, Motohiko Tashiro, Ying Huang…·Yasubumi Sakakibara

OrthologTransformer improves gene conversion between species by learning evolutionary differences, outperforming codon optimization in PETase expression.

2 citations

bacteria (other)DNA methylation

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