Author

Kıvılcım Öztürk

University of California San DiegoORCID 0000-0003-0159-8772Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:variant effect prediction· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:protein structure· 1

Frequent Co-Authors

Hannah K. CarteriD· 2 shared Dong‐Er ZhangiD· 1 shared Jeanna Sheen· 1 shared Kyle M. FordiD· 1 shared Nathan Payne· 1 shared Prashant MaliiD· 1 shared Rebecca PanwalaiD· 1 shared Stephan HütteriD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Hannah K. CarterORCID

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2 papers

Recent·Most cited

Interface-guided phenotyping of coding variants in the transcription factor RUNX1 with SEUSS

Kıvılcım Öztürk, Rebecca Panwala, Jeanna Sheen, Kyle M. Ford, Nathan Payne, Dong‐Er Zhang, Stephan Hütter, Torsten Haferlach, Trey E. Ideker, Prashant Mali, Hannah K. Carter

The paper uses SEUSS to analyze the effects of 115 RUNX1 mutations on RNA profiles in myelogenous leukemia cells, categorizing them into three functional groups.

bioRxiv · Aug 3, 2023 · PreprintBioinformatics

Predicting functional consequences of mutations using molecular interaction network features

Kıvılcım Öztürk, Hannah K. Carter

The paper develops network-based annotations for missense mutations to improve variant effect prediction, showing greater gains for somatic mutations than germline variants.

Human Genetics · Aug 25, 2021Peer-reviewedBioinformatics