Author

Daria Kostka

Silesian University of TechnologyORCID 0000-0003-0205-884XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:whole-exome sequencing· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Marek KimmeliD· 2 shared Roman JaksikiD· 2 shared Anna LalikiD· 1 shared Khanh Ngoc DinhiD· 1 shared Magdalena SitkiewicziD· 1 shared Monika KurpasiD· 1 shared Paweł SztromwasseriD· 1 shared Wiktoria Płonka· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Marek KimmelORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 8, 2026

Microhomology-Driven Genomic Alterations in Cancer Genomes: Patterns, Prevalence, and Clinical Implications.

Daria Kostka, Paweł Sztromwasser, Marek Kimmel, Roman Jaksik

This study assesses microhomology-associated deletions in cancer genomes, identifies their prognostic significance, and optimizes detection parameters for improved patient stratification.

DOI 10.64898/2026.09.03.744669

humanwhole-exome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 19, 2026

Correction of the cytosine deamination artifacts in FFPE-based sequencing experiments

Wiktoria Płonka, Daria Kostka, Anna Lalik…·Roman Jaksik

This study evaluates methods to correct cytosine deamination artifacts in FFPE sequencing, finding enzymatic repair is most effective and FFPErase is the best computational method.

DOI 10.64898/2026.08.11.744151

humanwhole-exome sequencing

𝕏 PostBluesky