Author

Prakash Raj Timilsena

Pennsylvania State UniversityORCID 0000-0003-0252-8186Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Bastiaan O. R. BargmanniD· 1 shared Claude W. dePamphilisiD· 1 shared Eric K. WafulaiD· 1 shared James H. MardeniD· 1 shared Mark J. GuiltinaniD· 1 shared N. P. WintersiD· 1 shared Paula E. Ralph· 1 shared Sai Pavan Bathala· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Bastiaan O. R. BargmannORCID

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2 papers

Recent·Most cited

Evolutionary BiologyG3 Genes Genomes GeneticsPeer-reviewedJul 3, 2025

Local Gene Duplications Drive Extensive NLR Copy Number Variation Across Multiple Genotypes of Theobroma cacao

N. P. Winters, Eric K. Wafula, Prakash Raj Timilsena…·James H. Marden

The study examines NLR copy number variation across 11 Theobroma cacao genomes, finding 3-fold variation driven by local duplications.

8 citations

plant (other)whole-genome sequencing

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BioinformaticsNature CommunicationsPeer-reviewedJan 2, 2025

Cross-species single-cell annotation with orthologous marker gene groups

Tran N. Chau, Prakash Raj Timilsena, Sai Pavan Bathala…·Song Li

The paper develops a method to annotate cell types across species using orthologous marker gene groups, identifying conserved cell-type markers in 15 plant species.

33 citationstop 1%

ArabidopsisscRNA-seq

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