Bastiaan O. R. Bargmann

The paper studies dedifferentiation in Arabidopsis thaliana using single-cell RNA sequencing, revealing cell-type-specific transcriptional changes and the role of phytohormones and chromatin remodeling.

The paper uses snRNA-seq to analyze Arabidopsis root cell responses to P. capsici infection, identifying transcriptional changes and hormone-related pathways in different cell types.

The paper introduces an open-source R-based workflow to improve reproducibility and scalability of fluorescent reporter gene analysis in plant protoplasts using flow cytometry.

scCoBench benchmarks co-expression methods in scRNA-seq using promoter-reporter lines, showing imputation improves correlation and biological relevance.

The paper develops a method to annotate cell types across species using orthologous marker gene groups, identifying conserved cell-type markers in 15 plant species.