Author

Paul Roginski

Centre National de la Recherche ScientifiqueORCID 0000-0003-0297-723XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1 Organism:rat· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Anna GrandchampiD· 2 shared Amir KargeriD· 1 shared Anne LopesiD· 1 shared Chloé QuignotiD· 1 shared Elias DohmeniD· 1 shared Lars A. EicholtiD· 1 shared Margaux AubeliD· 1 shared Victor A LuriaiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Anna GrandchampORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedOct 1, 2025

DeNoFo: a file format and toolkit for standardised, comparable de novo gene annotation

Elias Dohmen, Margaux Aubel, Lars A. Eicholt…·Anna Grandchamp

DeNoFo provides a standardised format and toolkit for reproducible de novo gene annotation, enabling consistent documentation and comparison across studies.

6 citations

database / resourcesoftware / tool

𝕏 PostBluesky

GenomicsGenome Biology and EvolutionPeer-reviewedAug 1, 2024

DE Novo emerged gene SEarch in Eukaryotes with DENSE

Paul Roginski, Anna Grandchamp, Chloé Quignot, Anne Lopes

DENSE is an automated pipeline for identifying de novo emerged genes, offering flexible strategies and a database of predictions across seven model organisms.

17 citations

humanmouse

𝕏 PostBluesky