Author

Simone Fouché

ETH ZurichORCID 0000-0003-0601-6073Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:fungi (other)· 3 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Daniel CrolliD· 3 shared Thomas BadetiD· 2 shared Ursula OggenfussiD· 2 shared Bruce Alan McDonaldiD· 1 shared Carolina Sardinha FranciscoiD· 1 shared Clémence Plissonneau· 1 shared Fanny E. HartmanniD· 1 shared Marcello Zala· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 17 mutual co-author links

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3 shared papersGenomics

Daniel CrollORCID

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3 papers

Recent·Most cited

GenomicsGenome Biology and EvolutionPeer-reviewedFeb 13, 2026

Recurrent chromosome destabilization through repeat-mediated rearrangements in a fungal pathogen

Simone Fouché, Ursula Oggenfuss, Bruce Alan McDonald, Daniel Croll

The paper identifies transposable elements and repeat-induced point mutation as triggers of chromosomal instability and degeneration in a fungal pathogen through experimental progeny analysis.

7 citationstop 1%

fungi (other)whole-genome sequencing

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GenomicsNature CommunicationsPeer-reviewedJun 10, 2021

Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen

Thomas Badet, Simone Fouché, Fanny E. Hartmann…·Daniel Croll

The paper uses machine-learning to identify genomic features that predict structural variation in fungal and plant genomes, showing base composition and retrotransposons drive rearrangements.

35 citations

fungi (other)Arabidopsis

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GenomicsbioRxivPreprintMay 9, 2019

Stress-driven transposable element de-repression dynamics in a fungal pathogen

Simone Fouché, Thomas Badet, Ursula Oggenfuss…·Daniel Croll

The paper investigates how different stress conditions affect transposable element (TE) expression in the fungal pathogen Zymoseptoria tritici, revealing distinct TE de-repression patterns and the influence of genetic background and genomic context.

10 citations

fungi (other)DNA methylation

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