Debashish Bhattacharya

The paper uses 2b-RAD sequencing to analyze genetic diversity in two Acropora cervicornis nurseries, finding high clonal redundancy with only three genets representing most colonies.

This study uses proteomic analysis to show that SCTLD in corals involves immune suppression, coral-algal dysbiosis, oxidative stress, and wound-healing responses.

The paper analyzes metaproteomic responses of three coral species to thermal stress, revealing species-specific strategies and conserved stress biomarkers.

This study analyzes the cell cycle of Saccharolobus islandicus and finds that transcriptional patterns are conserved with eukaryotes, showing phase-specific gene expression for metabolism, protein synthesis, and chromatinization.

This study investigates microbial and viral community dynamics in SCTLD-affected corals, revealing microbial destabilization and identifying potential beneficial microbiomes in asymptomatic colonies.

This study confirms whole-genome duplication in the algal symbiont Durusdinium trenchii and shows how lifestyle adaptations enhance coral thermotolerance.

The paper identifies and characterizes long non-coding RNAs in dinoflagellates, revealing their functional diversity and role in gene regulation under heat stress.

The paper studies how a geothermal spring community responds to diurnal stressors, revealing structured biotic interactions across domains of life.

The paper presents genome and transcriptome data from Effrenium voratum, showing genome reduction predates symbiosis in Symbiodiniaceae and highlights differences between free-living and symbiotic lineages.

The paper presents a multi-omics analysis of Prorocentrum cordatum under heat stress, revealing RNA editing and exon usage regulation of biomolecules.

The paper analyzes genetic variation and reproductive strategies in two sympatric Hawaiian coral species, finding one is strictly sexual and the other predominantly asexual with triploid clades.

The paper examines intraspecies genomic divergence in Symbiodiniaceae and Polarella glacialis, revealing greater sequence divergence and the role of gene duplication in functional innovation.

The paper presents an improved genome assembly of Cladocopium goreaui using long-read data, revealing structural features and a complex evolutionary history involving horizontal gene transfer.

The paper compares DNA methylation quantification methods in corals, revealing methodological biases and environmental sensitivity differences.

The paper presents whole-genome comparisons of Symbiodiniaceae isolates, revealing extensive sequence divergence but conserved gene functions across species and genera.

This study characterizes the thermal stress response in Montipora capitata using transcriptomic and metabolomic data, revealing key gene and metabolite changes associated with stress.

This study presents genome assemblies of Polarella glacialis, revealing a high proportion of single-exon genes and their role in cold adaptation.

The paper identifies methodological biases in gene prediction for algal genomes and shows how inconsistent approaches mislead comparative genomic analysis.

This study compares genome structures of symbiotic and free-living Symbiodinium species, finding extensive divergence and suggesting structural rearrangements contribute to lifestyle differences.