Elaine Yiqun Cao

Bambu-Clump improves transcript discovery and quantification from single-cell and spatial long-read RNA-seq data by leveraging cell and cluster information.

ShinyCell converts single-cell RNA sequencing data into interactive, shareable visualizations for easier exploration and sharing.

GeneSwitches identifies the order of gene-expression and functional events along pseudo-time trajectories in single-cell experiments.

The paper identifies translational regulators of fibrogenic genes in human cardiac fibroblasts and shows their role in cardiac fibrosis through ribosome profiling and RNA-binding protein analysis.