Jessica L. Mark Welch

maniFasta and AllOralsDB provide a tool and resource for creating standardized, comprehensive protein reference databases for metaproteomics.

The paper analyzes oral microbiome metagenomes to identify site-specific distribution and metabolic specialization of Porphyromonas species across health and disease.

This study identifies essential and conditionally essential genes for Haemophilus parainfluenzae survival and biofilm growth under aerobic and anaerobic conditions.

This paper introduces a spectral unmixing algorithm to separate fluorophores from autofluorescence in images, showing improved performance over existing methods.