Christopher R. Handelmann

maniFasta and AllOralsDB provide a tool and resource for creating standardized, comprehensive protein reference databases for metaproteomics.

This study introduces Pioneer-seq to analyze TF nucleosome binding and finds that KLF4 and SOX2 bind near the nucleosome dyad, with nucleosome sequence being the major determinant of TF binding.

This study examines how TP53, TP63, and TP73 bind to nucleosomes by analyzing binding site accessibility, composition, and helical orientation using Pioneer-seq.