Anastasia A. Zharikova

The paper jointly analyzes RNA-DNA and DNA-DNA interactomes across human and mouse cell lines, showing their close relationship is tissue-specific and conserved.

The paper introduces a triad interaction framework to reduce noise in RNA-chromatin interaction data and validate interactions using experimental controls.

BaRDIC improves peak calling in RNA-DNA interaction data by addressing chromatin heterogeneity and distance-dependent decay, outperforming existing methods.

The paper introduces RNA-Chrom, a database of RNA-chromatin interactions in human and mouse, providing tools to analyze contacts between RNAs and chromatin.

The paper introduces Red-C, a method to study RNA-DNA interactions, identifies ncRNAs associated with repressed chromatin, and traces mRNA production kinetics in K562 cells.

The paper identifies homozygous protein-truncating variants in vervet monkeys using whole genome sequencing and explores their potential impact on early infant mortality.