Wenguang Shao

PCfun annotates protein complex function using natural language processing and machine learning, integrating word embeddings from PubMed Central articles with supervised and unsupervised methods.

This study uses DIA-MS to profile proteomes and phosphoproteomes of melanoma cell lines, revealing proteotype determinants and validating DIA-MS as a competitive method.

The paper introduces DPHL, a pan-human protein mass spectrometry library built using DIA and PRM, and demonstrates its utility in identifying differentially expressed proteins in prostate cancer and DLBCL.