Author

Nitin Kumar

Wellcome Sanger InstituteORCID 0000-0002-2140-4923Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Nitin Kumar1 paper

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Trevor D. LawleyiD· 2 shared A. IndraiD· 1 shared Alejandra Escobar‐ZepedaiD· 1 shared Alexander MellmanniD· 1 shared Amoe Baktash· 1 shared B. Anne Neville· 1 shared Céline HarmanusiD· 1 shared Daniela A. CostaiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersGenomics

Trevor D. LawleyORCID

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3 papers

Recent·Most cited

In vitro demonstration of broad host range mobile genetic elements transferring antibiotic resistance from the human microbiome

Samuel C. Forster, Junyan Liu, Nitin Kumar, Emily L. Gulliver, Jodee A. Gould, Alejandra Escobar‐Zepeda, Tapoka T. Mkandawire, Lindsay J. Pike, Yan Shao, Mark D. Stares, Hilary P. Browne, B. Anne Neville, Trevor D. Lawley

The paper demonstrates broad host range mobile genetic elements transferring antibiotic resistance from human gut commensals to enteropathogens.

bioRxiv · Jan 18, 2022 · PreprintGenomics

Performance of Core Genome Multilocus Sequence Typing Compared to Capillary-Electrophoresis PCR Ribotyping and SNP Analysis of Clostridioides difficile

Amoe Baktash, Jeroen Corver, Céline Harmanus, Wiep Klaas Smits, Warren N. Fawley, MH Wilcox, Nitin Kumar, David W. Eyre, A. Indra, Alexander Mellmann, Ed J. Kuijper

The paper compares core genome MLST (cgMLST) with CE-PCR ribotyping and SNP analysis for C. difficile typing, finding cgMLST offers better discrimination but may require adjusted thresholds for outbreak detection.

bioRxiv · Aug 10, 2021 · PreprintMolecular Biology

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts

Daniela A. Costa, Simon Lévesque, Nitin Kumar, Pablo Fresia, Ignacio Ferrés, Trevor D. Lawley, Gregorio Iraola

The paper analyzes the pangenome of Campylobacter hyointestinalis subspecies to reveal genetic isolation and host adaptation differences.

Scientific Reports · Feb 9, 2021Peer-reviewedGenomics