Author

Jonathan M. Palmer

US Forest ServiceORCID 0000-0003-0929-3658Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:experimental assay· 2 Organism:fungi (other)· 2 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Abigail LindiD· 1 shared Antonis RokasiD· 1 shared Benjamin SchwessingeriD· 1 shared Castle Raley· 1 shared Catarina LameirasiD· 1 shared Cory D. HirschiD· 1 shared Daniel L. LindneriD· 1 shared Diana P. Garnica· 1 shared

Activity by Year

2017-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperGenomics

Abigail LindORCID

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3 papers

Recent·Most cited

MicrobiologyPeerJPeer-reviewedMay 28, 2018

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data

Jonathan M. Palmer, Michelle A. Jusino, Mark T. Banik, Daniel L. Lindner

The paper introduces synthetic spike-in controls and the AMPtk software to improve the accuracy of mycobiome data analysis using HTAS.

275 citationstop 1%

metagenomicsexperimental assay

𝕏 PostBluesky

GenomicsmBioPeer-reviewedFeb 19, 2018

De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust

Marisa E. Miller, Ying Zhang, Vahid Omidvar…·Melania Figueroa

This study presents haplotype-phased genome assemblies of two dikaryotic Puccinia coronata f. sp. avenae isolates, revealing structural variation and heterozygous SNPs, and identifies co-expressed effector candidates associated with virulence differences.

68 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsPLoS BiologyPeer-reviewedNov 17, 2017

Drivers of genetic diversity in secondary metabolic gene clusters within a fungal species

Abigail Lind, Jennifer H. Wisecaver, Catarina Lameiras…·Antonis Rokas

This study identifies five types of genetic variation in secondary metabolic gene clusters across 66 strains of Aspergillus fumigatus and links them to evolutionary drivers like mutation, recombination, and horizontal gene transfer.

219 citationstop 1%

fungi (other)whole-genome sequencing

𝕏 PostBluesky