Author

Daniella Castanheira Bartholomeu

Universidade Federal de Minas GeraisORCID 0000-0003-0974-7357Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

João Luís Reis-CunhaiD· 4 shared Ana Laura Grossi de OliveiraiD· 1 shared Anderson Coqueiro dos SantosiD· 1 shared Anikó EkártiD· 1 shared Ashlee M. EarliD· 1 shared Augusto César Parreiras de JesusiD· 1 shared Azäel SaldañaiD· 1 shared Barbara A. BurleighiD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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4 shared papersBioinformatics

João Luís Reis-CunhaORCID

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4 papers

Recent·Most cited

BioinformaticsBriefings in BioinformaticsPeer-reviewedSep 23, 2024

Phylogeny-aware linear B-cell epitope predictor detects candidate targets for specific immune responses to Monkeypox virus

Felipe Campelo, Ana Laura Grossi de Oliveira, João Luís Reis-Cunha…·Francisco Pereira Lobo

The paper develops a phylogeny-aware model to predict linear B-cell epitopes for Monkeypox virus, identifying nine specific peptides as potential diagnostic targets.

10 citations

virusproteomics

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GenomicsGenome ResearchPeer-reviewedApr 11, 2024

Aneuploidies are an ancestral feature of trypanosomatids, and an ancient chromosome duplication is maintained in extant species

João Luís Reis-Cunha, Samuel Alexandre Pimenta Carvalho, Laila Almeida Viana…·Daniel Charlton Jeffares

The paper analyzes aneuploidy patterns across 866 Trypanosomatid isolates, finding aneuploidies are ancestral and an ancient duplication is maintained in some species.

18 citations

DNA methylationwhole-genome sequencing

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GenomicsFrontiers in Cellular and Infection MicrobiologyPeer-reviewedMar 3, 2021

Repeat-driven generation of antigenic diversity in a major human pathogen, Trypanosoma cruzi

Carlos N. Talavera-López, Louisa Alexandra Messenger, Michael D. Lewis…·Björn Andersson

The paper presents an improved genome assembly of Trypanosoma cruzi and reveals a unique genomic structure involving subtelomeric regions and retrotransposons contributing to antigenic variation.

56 citationstop 3%

whole-genome sequencingstatistical model

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BioinformaticsPLoS ONEPeer-reviewedOct 2, 2019

ProphET, Prophage Estimation Tool: a standalone prophage sequence prediction tool with self-updating reference database

João Luís Reis-Cunha, Daniella Castanheira Bartholomeu, Ashlee M. Earl…·Gustavo Coutinho Cerqueira

ProphET identifies prophages in bacterial genomes with higher precision than existing tools and includes a self-updating reference database.

55 citationstop 3%

bacteria (other)statistical model

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