Nicholas M. Thomson

This study identifies molecular mechanisms enabling S. sonnei to outlast S. flexneri during nutrient starvation, highlighting key pathways and suggesting multigenic adaptation contributes to its epidemiological dominance.

This study characterizes antimicrobial resistance and virulence genes in E. coli isolated from household water in Ibadan, Nigeria, finding multidrug resistance and diarrheagenic genes more common in dry season isolates.

This study characterizes the genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in rural Gambia, identifying novel sequence types and antimicrobial resistance genes.

This study analyzes genomic diversity and antimicrobial resistance in Escherichia coli isolates from non-human primates in the Gambia, identifying novel sequence types and potential human pathogen exchange.

CoronaHiT is a method for high-throughput SARS-CoV-2 genome sequencing that improves coverage and throughput compared to existing protocols.