Author

Alp Aydin

Norwich Research ParkORCID 0000-0002-9909-3520Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:ecology & biodiversity· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Justin O’GradyiD· 2 shared Alexander J. TrotteriD· 1 shared Alison E. MatheriD· 1 shared Ana P. TedimiD· 1 shared Ana Victoria GutiérreziD· 1 shared Anastasia KolyvaiD· 1 shared Andrew BelliD· 1 shared Andrew J. PageiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMicrobiology

Justin O’GradyORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Characterising the microbial and antimicrobial resistance signatures of hospital-acquired pneumonia using nanopore metagenomic sequencing

Cedric C.S. Tan, Alp Aydin, Dewi R Owen, Sylvia Rofael, David A. Brealey, Mark John Peters, Themoula Charalampous, John Robert Hurst, Timothy Daniel McHugh, David M. Livermore, Vanya A. Gant, Justin O’Grady, François Balloux, Lucy van Dorp, Virve I. Enne

This study uses nanopore metagenomic sequencing to analyze the microbiomes of HAP patients, revealing high fungal prevalence and multi-drug-resistant microbes.

bioRxiv · Aug 9, 2025 · PreprintMicrobiology

CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes

Dave Baker, Alp Aydin, Thanh Le-Viet, Gemma L. Kay, Steven J. Rudder, Leonardo de Oliveira Martins, Ana P. Tedim, Anastasia Kolyva, María Díaz, Nabil-Fareed Alikhan, Lizzie Meadows, Andrew Bell, Ana Victoria Gutiérrez, Alexander J. Trotter, Nicholas M. Thomson, , Justin O’Grady

CoronaHiT is a method for high-throughput SARS-CoV-2 genome sequencing that improves coverage and throughput compared to existing protocols.

bioRxiv · Jun 24, 2020 · PreprintGenomics