Kian Faizi

The paper develops Ariadne to analyze root system architecture tradeoffs in Arabidopsis, finding developmental stage, genotype, and manganese availability influence cost-efficiency balance.

The paper identifies regulatory elements and transcription factors in E. coli genes across diverse environments using experimental and computational methods.

The paper creates synthetic single-cell gene expression data using thermodynamic models to better understand and optimize MPRA experiments for regulatory architecture inference.