Yabing Song

GEfetch2R downloads and processes scRNA-seq and bulk RNA-seq data from public repositories, converts formats between scRNA-seq objects, and benchmarks conversion tools.

This study identifies Cloche/Npas4l as a pro-regenerative platelet factor in zebrafish heart regeneration, showing its role in regulating cardiomyocyte and endothelial cell proliferation through ligand-receptor interactions.

The paper introduces ggcoverage, an R package for visualizing and annotating genome coverage from NGS data, offering flexibility and publication-quality plots.

This study shows that endothelial Brg1 regulates Notch signaling in zebrafish heart regeneration by modulating H3K4me3 levels and interacting with Kdm7aa.