Author

Oliver M. Bernhardt

Biognosys (Switzerland)ORCID 0000-0003-1448-8150Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Lukas ReiteriD· 3 shared Tejas GandhiiD· 3 shared Anne C. Silva BarbosaiD· 1 shared Barbora ŠalovskáiD· 1 shared Bettina Streckenbach· 1 shared Birgit SchillingiD· 1 shared Christie L. HunteriD· 1 shared Christopher BelowiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBiochemistry

Lukas ReiterORCID

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3 papers

Recent·Most cited

BiochemistryMolecular & Cellular ProteomicsPeer-reviewedDec 10, 2025

Enhanced Identifications and Quantification through Retention Time Down-Sampling in Fast-Cycling diagonal-PASEF Methods

Christopher Below, Oliver M. Bernhardt, Stephanie Kaspar-Schönefeld…·Lukas Reiter

This paper optimizes diagonal-PASEF mass spectrometry with retention time down-sampling, improving identifications and quantification in proteomics.

7 citations

proteomicsdeep learning

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Systems BiologybioRxivPreprintOct 28, 2024

A Comprehensive and Robust Multiplex-DIA Workflow Profiles Protein Turnover Regulations Associated with Cisplatin Resistance

Barbora Šalovská, Wenxue Li, Oliver M. Bernhardt…·Yansheng Liu

This study introduces a robust multiplex DIA-MS workflow with machine learning and statistical filtering to profile protein turnover in cisplatin-resistant cancer cells, revealing correlations between transcript regulation and protein degradation.

3 citations

humanproteomics

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Molecular BiologyPROTEOMICSPeer-reviewedSep 29, 2023

Substantial Downregulation of Mitochondrial and Peroxisomal Proteins during Acute Kidney Injury revealed by Data-Independent Acquisition Proteomics

Jordan B. Burton, Anne C. Silva Barbosa, Joanna Bons…·Birgit Schilling

21 citations

mouseproteomics

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