Author

Douglas S. Clark

University of California, BerkeleyORCID 0000-0003-1516-035XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam P. ArkiniD· 2 shared Aaron J. BerlineriD· 1 shared Adam M. DeutschbaueriD· 1 shared Ali MesbahiD· 1 shared Anthony J. AbeliD· 1 shared Fengzhe ShiiD· 1 shared Georgios MakrygiorgosiD· 1 shared Jeffrey M. SkerkeriD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Adam P. ArkinORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Eliminating Genes for a Two Component System Increases PHB Productivity in Cupriavidus basilensis 4G11 Under PHB Suppressing, Non-Stress Conditions

Kyle B. Sander, Anthony J. Abel, Skyler Friedline, William A. Sharpless, Jeffrey M. Skerker, Adam M. Deutschbauer, Douglas S. Clark, Adam P. Arkin

This study identifies two genes in a two-component system whose deletion increases PHB productivity in Cupriavidus basilensis under non-stress conditions.

Biotechnology and Bioengineering · Aug 28, 2023Peer-reviewedGenomics

Data-Driven Flow-Map Models for Data-Efficient Discovery of Dynamics and Fast Uncertainty Quantification of Biological and Biochemical Systems

Georgios Makrygiorgos, Aaron J. Berliner, Fengzhe Shi, Douglas S. Clark, Adam P. Arkin, Ali Mesbah

This paper introduces data-driven flow-map models for efficiently discovering dynamics and quantifying uncertainty in biochemical systems using polynomial chaos Kriging.

Biotechnology and Bioengineering · Dec 1, 2022Peer-reviewedSystems Biology