Ilyes Abdelhamid

The paper maps RNA-DNA interactions in 16 human cell types, showing cell-type-specific and dynamic networks that correlate with gene regulation and disease traits.

This paper introduces Network Shape Intelligence (NSI) and shows it outperforms AlphaFold2 in predicting protein interactions using only local network information without training.

The paper introduces a network automaton rule, CH2-L3, to predict complex network structures across different domains like protein interactomes and food webs by maximizing internal links in local communities.