Amanda Piveta Schnepper

The human RNA-DNA interactome is cell type-specific and dynamic

The paper maps RNA-DNA interactions in 16 human cell types, showing cell-type-specific and dynamic networks that correlate with gene regulation and disease traits.

Systematic Evaluation of Feature Representations for Cancer-Associated sORF Prediction in Non-coding RNA

The paper evaluates feature representations for predicting cancer-associated sORFs in non-coding RNA using traditional machine learning models and finds that k-mer features outperform genomic language model embeddings.

The ethanol tolerance in Saccharomyces cerevisiae under a phenomics perspective

The paper investigates ethanol tolerance in Saccharomyces cerevisiae by analyzing lncRNAs and metabolic pathways in high and low tolerance strains.

LncRNAs of Saccharomyces cerevisiae dodge the cell cycle arrest imposed by the ethanol stress

The paper investigates how two lncRNAs in Saccharomyces cerevisiae influence cell cycle arrest during ethanol stress, showing they bypass checkpoints in different tolerant strains.