Author

Chris S. Magnano

University of Wisconsin–MadisonORCID 0000-0003-1539-587XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:benchmark study· 1 Approach:statistical model· 1

Frequent Co-Authors

Anthony GitteriD· 2 shared Adam ShedivyiD· 1 shared Aden O'Brien· 1 shared Akniyet NurboliD· 1 shared Altaf BarelviiD· 1 shared Anna RitziD· 1 shared Canek Llera-Magord· 1 shared Daniel Nachreiner· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Anthony GitterORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 9, 2026

A Framework for Benchmarking Pathway Reconstruction Algorithms

Neha Talluri, Tristan Figueroa-Reid, Justin Hiemstra…·Anthony Gitter

This paper benchmarks 14 pathway reconstruction algorithms across 822 datasets using a standardized framework to evaluate performance, similarity, and computational efficiency.

DOI 10.64898/2026.08.04.742550

benchmark studybenchmarking

𝕏 PostBluesky

Bioinformaticsnpj Systems Biology and ApplicationsPeer-reviewedFeb 23, 2021

Automating parameter selection to avoid implausible biological pathway models

Chris S. Magnano, Anthony Gitter

This paper develops a method to tune pathway reconstruction algorithms to avoid biologically implausible predictions by using graphlet decomposition metrics and pathway databases.

15 citations

statistical modelbenchmarking

𝕏 PostBluesky