Author

Alena Khmelinskaia

Ludwig-Maximilians-Universität MünchenORCID 0000-0003-1584-9800Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Biochemistry· 1 Bioengineering· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:protein design· 2 Assay:protein structure· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:human· 1 Assay:protein sequence· 1

Frequent Co-Authors

Bhoomika Basu MallikiD· 2 shared Clara T. SchoederiD· 2 shared D. L. RIEGERiD· 2 shared Ho Yeung ChimiD· 2 shared Miguel Atienza JuanateyiD· 2 shared Phillip SchlegeliD· 2 shared Alex Reis· 1 shared Anna U. Macintyre· 1 shared

Activity by Year

2017-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioengineering

Bhoomika Basu MallikORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioengineeringbioRxivPreprintSep 18, 2026

✦ In-depth digest

Latent generative search unlocks de novo design of untapped biomolecular interactions at scale

Kieran Didi, Danny Reidenbach, Matthew Penner…·Karsten Kreis

Reward-guided inference-time search over the Proteína-Complexa sequence-structure codesign model yields validated binders across 127 targets, kinases and a free carbohydrate, with codesigned sequences outperforming ProteinMPNN redesign.

4 citations

humanvirus

𝕏 PostBluesky

BiochemistrybioRxivPreprintJul 3, 2026

A generalizable interface-seeded framework for de novo design of functional oligomers

Ho Yeung Chim, Mubarak Olanrewaju Idris, D. L. RIEGER…·Alena Khmelinskaia

This paper introduces an AI-based framework for designing responsive protein oligomers that assemble in response to chemical or phosphorylation triggers, validated through experimental testing.

DOI 10.64898/2026.07.02.736098

protein structuredeep learning

𝕏 PostBluesky

Synthetic BiologyeLifePeer-reviewedMay 2, 2017

Control of Lipid Domain Organization by a Biomimetic Contractile Actomyosin Cortex

Sven Kenjiro Vogel, Ferdinand Greiss, Alena Khmelinskaia, Petra Schwille

This study investigates how actin cortex remodeling affects lipid domain organization by using reconstituted actin cortices and phase-separated lipid membranes.

54 citations

experimental assay

𝕏 PostBluesky