Author

Ryo Onuma

Kobe University Research Center for Inland SeasORCID 0000-0003-1592-0814Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Shin‐ya MiyagishimaiD· 3 shared Andrew ToselandiD· 1 shared Atsuko Hikikoshi IwaneiD· 1 shared Baifeng ZhouiD· 1 shared Bernard HenrissatiD· 1 shared Cock van OosterhoutiD· 1 shared Dai TsujinoiD· 1 shared Daisuke YamagishiiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersPlant Biology

Shin‐ya MiyagishimaORCID

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3 papers

Recent·Most cited

Plant BiologyThe Plant CellPeer-reviewedMay 21, 2026

Sexual life cycle establishes the unicellular red algae Cyanidiophyceae as a genetically tractable model lineage for eukaryotic evolution

Shunsuke Hirooka, Takayuki Fujiwara, Mark Seger…·Shin‐ya Miyagishima

The paper identifies sexual life cycles in Cyanidiophyceae algae, develops genetic tools, and reveals phase-specific epigenetic regulation, positioning them as a model for eukaryotic evolution.

DOI 10.1093/plcell/koag148

C. elegansDNA methylation

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Evolutionary BiologyJournal of Eukaryotic MicrobiologyPeer-reviewedApr 25, 2025

Experimental bleaching of photosymbiotic amoeba revealed strain-dependent differences in algal symbiosis ability.

Daisuke Yamagishi, Ryo Onuma, Sachihiro Matsunaga…·Shinichiro Maruyama

This study bleached photosymbiotic amoebae to investigate strain-dependent differences in algal symbiosis ability.

6 citationstop 4%

experimental assay

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GenomicsScience AdvancesPeer-reviewedApr 29, 2022

Genome evolution of a non-parasitic secondary heterotroph, the diatom Nitzschia putrida

Ryoma Kamikawa, Takako Mochizuki, Mika Sakamoto…·Yasukazu Nakamura

This study reports the diploid genome of the free-living diatom Nitzschia putrida and identifies genetic changes associated with its transition from a photosynthetic to a non-parasitic secondary heterotrophic lifestyle.

26 citations

whole-genome sequencingstatistical model

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