Author

Yichen Ding

Temasek Life Sciences LaboratoryORCID 0000-0003-1752-8269Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Organism:E. coli· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Henning SeedorfiD· 2 shared Linda Wei Lin TaniD· 2 shared Niranjan NagarajaniD· 2 shared Aarthi RavikrishnaniD· 1 shared Adrian LowiD· 1 shared Amanda Hui Qi NgiD· 1 shared Daniela I. Drautz‐MosesiD· 1 shared Denis Bertrand· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMicrobiology

Henning SeedorfORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 7, 2025

Comparative genomics of DH5α-inhibiting Escherichia coli isolates from human feces reveals common co-occurrence of bacteriocin genes with virulence factors and antibiotic resistance genes.

Shuan Er, Yichen Ding, Linda Wei Lin Tan…·Henning Seedorf

This study identifies bacteriocin genes co-occurring with antibiotic resistance and virulence factors in gut E. coli, highlighting their role in microbial dynamics and resistance dissemination.

DOI 10.1101/2025.05.07.652706

E. coliwhole-genome sequencing

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GenomicsNature CommunicationsPeer-reviewedOct 13, 2022

Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

Jean-Sébastien Gounot, Minghao Chia, Denis Bertrand…·Niranjan Nagarajan

The paper uses long-read and Hi-C technologies to analyze gut microbiomes from Southeast Asians, revealing novel species, improved references, and uncharacterized biosynthetic gene clusters.

68 citationstop 3%

humanmetagenomics

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GenomicsCommunications BiologyPeer-reviewedMay 23, 2018

The Acquisition of Resistance to Carbapenem and Macrolide-mediated Quorum Sensing Inhibition by Pseudomonas aeruginosa via a Novel Integrative and Conjugative Element ICETn43716385

Yichen Ding, Jeanette W. P. Teo, Daniela I. Drautz‐Moses…·Liang Yang

46 citations

humanwhole-genome sequencing

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