Jean-Sébastien Gounot

The paper identifies GuFi phages as prevalent gut viral families using long-read sequencing and shows their broad host ranges and underappreciated impact on the microbiome.

This paper evaluates a high-throughput single-cell dispensing platform for isolating Bifidobacterium strains from fecal samples, demonstrating its effectiveness in recovering diverse, novel bacterial isolates.

The paper identifies prevalent skin microbiome configurations (dermotypes) across body sites and links them to host factors and disease risk.

The paper analyzes gut metagenomes of Asian octogenarians to identify age-related microbial shifts and their associations with aging phenotypes.

Floria rapidly and accurately recovers strain haplotypes from metagenomic data, outperforming existing methods in speed and strain content recovery.

This study compares genomic evolution between domesticated and wild Kluyveromyces lactis yeast populations, finding reduced diversity and gene introgression in domesticated strains.

The paper uses long-read and Hi-C technologies to analyze gut microbiomes from Southeast Asians, revealing novel species, improved references, and uncharacterized biosynthetic gene clusters.

The paper sequenced 53 Brettanomyces bruxellensis genomes to study genetic variation and its relationship with ploidy level and gene content.

The paper presents a high-quality de novo genome assembly of Dekkera bruxellensis UMY321 using Nanopore and Illumina sequencing, providing insights into genomic variability within the species.