Risa Karakida Kawaguchi

The paper shows transcriptomic individuality in genetically identical armadillo quadruplets is driven by monocyte lineage expansion and stable gene expression differences.

The paper identifies that ~12% of human intergenic enhancer RNAs contain long open reading frames that can be translated into proteins.

This study identifies intersegment interactions in influenza A virus infected cells using LIGR-seq, showing they form in viral inclusions and are influenced by vRNP concentration and Rab11.

Longitudinal gene expression in identical armadillo quadruplets reveals a major role for developmental stochasticity.

The paper shows Rad53 binds to gene promoters under replication stress, influencing gene expression and coordinating replication with transcription.

The paper benchmarks neuronal cell-type annotation in scATAC-seq data using marker genes and introduces a deep learning model to predict chromatin accessibility from DNA sequence.

reactIDR evaluates the statistical reproducibility of high-throughput RNA structural analyses to classify RNA reactivity into stem, loop, and unmapped categories with high accuracy.