Author
University of OxfordORCID 0000-0003-1824-7653Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Zunair Khurram, Chrispin Chaguza, Brenda Kwambana-Adams…·Gerry Q. Tonkin‐Hill
MxSure estimates within-host substitution rates and transmission SNP thresholds from pairwise SNP distances, addressing challenges in microbial genome evolution analysis.
Gerry Q. Tonkin‐Hill, Yan Shao, Alexander E. Zarebski…·Jukka Corander
TRACS improves transmission inference by accurately estimating SNP-level genetic distances, outperforming existing methods in multiple datasets and revealing species-specific transmission rates between mothers and infants.
Alexander E. Zarebski, Louis du Plessis, Kris Varun Parag, Oliver G. Pybus
The paper introduces a computationally efficient birth-death model that integrates phylogenetic and epidemiological data to estimate transmission dynamics and unreported infections.
Alexander E. Zarebski, Robert G. Moss, James M. McCaw
The paper introduces a sub-exponential branching process model to study early epidemic dynamics, applied to Ebola data showing sub-exponential transmission.