Author

Patrick F. McDermott

Center for Veterinary MedicineORCID 0000-0003-1868-8096Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:bacteria (other)· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1

Frequent Co-Authors

Errol A. StrainiD· 2 shared Shaohua ZhaoiD· 2 shared Andrea OtteseniD· 1 shared Brandon KocurekiD· 1 shared Brenna M. FlanneryiD· 1 shared Chih-Hao HsuiD· 1 shared Cong LiiD· 1 shared Elizabeth A. ReediD· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Errol A. StrainORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologyFrontiers in Veterinary SciencePeer-reviewedApr 11, 2024

Paired metagenomic and chemical evaluation of an aflatoxin contaminated dog kibble

Andrea Ottesen, Brandon Kocurek, Elizabeth A. Reed…·Errol A. Strain

The paper evaluates aflatoxin-contaminated dog kibble using paired metagenomic and chemical data to correlate fungal DNA abundance with toxin levels.

6 citations

metagenomicsexperimental assay

𝕏 PostBluesky

GenomicsbioRxivPreprintFeb 2, 2024

The spread of pESI-mediated extended-spectrum cephalosporin resistance in Salmonella serovars - Infantis, Senftenberg, and Alachua isolated from food animal sources in the United States

Cong Li, Heather P. Tate, Xinyang Huang…·Errol A. Strain

This study investigates the origin, prevalence, and evolution of the pESI plasmid in Salmonella isolates from food animals in the US, identifying clusters and tracking the spread of antibiotic resistance genes.

3 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsJournal of Clinical MicrobiologyPeer-reviewedOct 12, 2018

Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella

Marcus Nguyen, Scott Wesley Long, Patrick F. McDermott…·James J. Davis

This study uses XGBoost to predict antimicrobial MICs for nontyphoidal Salmonella with high accuracy using genomic data.

301 citationstop 1%

bacteria (other)whole-genome sequencing

𝕏 PostBluesky