Brian E. Scheffler

The paper presents de novo genome assemblies of four rainbow trout lines to identify structural variants and build a pangenome reference for studying domestication and adaptation.

This study constructs a mango pangenome to explore genetic diversity and evolution, identifying structural variations, SNPs, and trait-associated genes for breeding and conservation.

This study produces a chromosomal-level genome assembly for westslope cutthroat trout and identifies interspecific chromosomal rearrangements with rainbow trout.

The paper presents a chromosome-scale, haplotype-phased genome of sugar beet line FC309 and identifies a QTL for Fusarium Yellows resistance on Chromosome 3.

The paper assembles the chromosome-scale genome of the Hunt bumble bee, Bombus huntii, using PacBio and HiC sequencing, achieving high continuity and chromosome organization.

This paper presents the first chromosome-scale genome assembly of Anastrepha obliqua using HiFi long-read sequencing, providing a resource for future genetic and genomic research.

The paper generates a chromosome-level de-novo genome assembly and develops a 50K SNP array for North American Atlantic salmon, revealing karyotype differences due to chromosomal fissions and fusions.

The paper presents the first chromosome-level genome assembly of the pink bollworm, providing a complete reference for studying Bt resistance and molecular genetics.

The paper presents the first high-quality genome assembly of the house cricket and demonstrates genetic engineering techniques for improving its agricultural and industrial applications.

The paper presents a chromosome-scale genome assembly of a Bt-resistant Helicoverpa zea strain to aid in understanding resistance mechanisms and crop protection strategies.

The paper tracks structural mutations in rice over a century of breeding, showing exonic mutations are removed more rapidly than other mutation types during selection.

The paper presents a de-novo genome assembly of the Arlee homozygous rainbow trout line using long-read sequencing and scaffolding, revealing structural variations and improving gene annotation.

AhNGE provides RNAseq data and ortholog analysis for peanut nodule development, enabling comparative genomics with other legumes and non-legumes.

The paper presents a high-quality genome assembly of a field-collected Spotted Lanternfly using PacBio long-read sequencing, achieving high contiguity and completeness.

The paper constructs an EST-SSR-based genetic linkage map and identifies a QTL for anthracnose resistance in water yam, aiding in marker-assisted breeding.